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DP question

sgoyalsgoyal San CarlosMember

Hi there,

Can somebody please confirm why DP in Info and Format fields are different. My assumption is Info field DP (847 in example below ) includes reads that failed Haplotype Caller filter... correct ?

X 31226370 . A C 26706.77 PASS AC=2;AF=1.00;AN=2;DP=847;ExcessHet=3.0103;FS=0.000;GQ=99;MLEAC=2;MLEAF=1.00;MQ=69.97;QD=32.25;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,828:828:99:26735,2485,0

Swati

Answers

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