The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
Can somebody please confirm why DP in Info and Format fields are different. My assumption is Info field DP (847 in example below ) includes reads that failed Haplotype Caller filter... correct ?
X 31226370 . A C 26706.77 PASS AC=2;AF=1.00;AN=2;DP=847;ExcessHet=3.0103;FS=0.000;GQ=99;MLEAC=2;MLEAF=1.00;MQ=69.97;QD=32.25;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,828:828:99:26735,2485,0