We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Abnormal genome plot running GATK4 CNV workflow

xuejiaxuejia CrownbioMember

Hi GATK team,
I am a new user of GATK4 CNV workflow. I can get all the output files from computing steps. They all look fine. However, the read dots are missing in the resulting PNG files. I can only see the axes and labels.
This is the command i used:
java -jar /home/jxue/softwares/GATK4_CNV/gatk4.jar PlotSegmentedCopyRatio -TN E08055T.tn.tsv -PTN E08055T.ptn.tsv -S E08055T.seg -O . -pre E08055 -LOG -schr

Thanks a lot in advance!

Jia

Tagged:

Best Answer

Answers

Sign In or Register to comment.