Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Can mutect2 be used for sequence data from pooled-Seq?
Hi, I am using Haplotype caller to call variants from WGS samples on pooled individuals. I wonder if there is a benefit to using Mutect2 in this case? Is it better controlling for ploidy effects somehow given that it can be used for cancer genomes?