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If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Transloation detection on sex chromosome with one batch data?

We have a batch of data from 8 subjects generated with Ion Proton sequencer. We are interested in detecting translocation events in these subjects. We do not have reference data from other subjects. How can I use GenomeTRiP to analalyze this data and get the results about translocations? Or is it possible at all?

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