Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Genotype Concordance HG19 file? Which to pick?
I'm looking for a standard high confidence VCF file to compare several dozen NA12891 samples for genotype concordance. We are testing different protocols and would like to determine which is most accurate & sensitive at calling variants. I see the resource bundle here:
But there are lots of options and I'm not sure what to pick. Any recommendations? Also, I've done a grep on some of these files and I can't find any NA12891
This file does however:
Should I go with that? Use a different file? Mix and Match?