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Any plan for MuTect2 to support calling more than a single tumor-normal pair at a time?

I would like to be able to compare many samples to each other at a time to find the frequency of somatic SNP appearance across multiple samples. Are there any plans to allow for MuTect2 to make multiple comparisons at a time?

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  • I am not using it for tumor/cancer analysis, but rather to pick up all of the variants between different samples taken from a single individual. But good to know, thanks for the reply!

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