Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Installation v18.104.22.168 on Ubuntu 14.04.05 failed systematically
We try to install oncotator latest release (v22.214.171.124) on a Ubuntu 14.04.5 LTS. But failed
First python setup.py install failed due to some reason
So we have installed all dependancies manually as described in http://gatkforums.broadinstitute.org/gatk/discussion/4153/what-are-the-platform-requirements-and-software-dependencies-for-running-oncotator
Then retrying installation resulted in a error with the following message:
error: Setup script exited with error: Command "x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -c build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.c -o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/npymath/ieee754.o" failed with exit status 1
Is there any solution or obvious manner to successfull our installation.
Many thanks for your help
/ Sandrine Imbeaud