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How to filter out the SNPs with deletion allel ?
I'm wondering whether there are a way to filter out the SNPs with deletion allel (*). I'm just not confident enough to keep these snps so I prefer rather discard them rather than having false snp.
However, in VariantFiltration or SelectVariants, there seems to be no option to filter or discart this type of SNPs.
I'm looking forward to having your response.