Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How to filter out the SNPs with deletion allel ?
I'm wondering whether there are a way to filter out the SNPs with deletion allel (*). I'm just not confident enough to keep these snps so I prefer rather discard them rather than having false snp.
However, in VariantFiltration or SelectVariants, there seems to be no option to filter or discart this type of SNPs.
I'm looking forward to having your response.