Discussion Error Best Practices links for Exome Germline Variant Calling broken!

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6. For tool errors, include the error stacktrace as well as the exact command.
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8. For weird results, include an illustrative example, e.g. attach IGV screenshots according to Article#5484.
9. For a seeming variant that is uncalled, include results of following Article#1235.

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Error Best Practices links for Exome Germline Variant Calling broken!

rstones12 Newcastle University UKMember ✭

February 2017 in Ask the GATK team

[email protected]

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Best Answers

Geraldine_VdAuwera Cambridge, MA admin

February 2017 Accepted Answer

Ah, that's an older document that has been deprecated and replaced by a newer one, https://software.broadinstitute.org/gatk/documentation/article?id=6747. The old doc is still accessible at http://gatkforums.broadinstitute.org/gatk/discussion/2799

Thanks for reporting this, we'll update our links on the best practices page.

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rstones12 Newcastle University UK ✭

February 2017 Accepted Answer

cheers

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Answers

Geraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

February 2017

What link are you using? The doc pages work for me.

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rstones12 Newcastle University UKMember ✭

February 2017

Can you send me a URL link - this is broken https://software.broadinstitute.org/gatk/documentation/article?id=2799

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rstones12 Newcastle University UKMember ✭

February 2017

Error retrieving document -- It seems the requested document is not accessible through this webpage.

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Geraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

February 2017 Accepted Answer

Ah, that's an older document that has been deprecated and replaced by a newer one, https://software.broadinstitute.org/gatk/documentation/article?id=6747. The old doc is still accessible at http://gatkforums.broadinstitute.org/gatk/discussion/2799

Thanks for reporting this, we'll update our links on the best practices page.

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rstones12 Newcastle University UKMember ✭

February 2017 Accepted Answer

cheers

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