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RNASeQC: Any parallelization

stoweystowey United StatesMember, Broadie admin
edited February 2017 in Ask the GATK team

Hello,

Does anyone know if there is a way to parallelize RNASeQC. From what I can see, it's only using about 1 thread, even when I provide it multiple samples. (I'd like to run it on 96 at once.)

If not, does anyone have any good alternatives to RNASeQC?

Thanks for your help!

EDIT: I should mention I'm using a local install (version 1.1.7), and a local machine with 32-cores so I shouldn't be artificially limiting my core usage in any way.

Issue · Github
by Sheila

Issue Number
1721
State
closed
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vdauwera

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