Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
RNASeQC: Any parallelization
Does anyone know if there is a way to parallelize RNASeQC. From what I can see, it's only using about 1 thread, even when I provide it multiple samples. (I'd like to run it on 96 at once.)
If not, does anyone have any good alternatives to RNASeQC?
Thanks for your help!
EDIT: I should mention I'm using a local install (version 1.1.7), and a local machine with 32-cores so I shouldn't be artificially limiting my core usage in any way.