This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
Mutect2 without all normals
I have cancer samples for a set of 44 patients among which I have 11 sain controls (so, I have sain controls for 1/4 of my patients). Can I perform Mutect2 to call variants using -artefact_mode for those without controls ? Otherwise which solutions do I have to treat these patients without controls ?
Thanks for your time