Test-drive the GATK tools and Best Practices pipelines on Terra
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Format of gatk4cnv_padded_target_bed_capture in "GATK 4 CNV Proportional Coverage for Capture"
I am trying to run "GATK_Somatic_CNV_Toolchain_Capture" and absolute on targeted sequences with no matched normal.
I understand that the first step is to run "GATK 4 CNV Proportional Coverage for Capture" with the interval list used.
What should the format of "target_bed" be? Is there an example?