Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

DP field Mutect2

Hi all!
I have used Mutect2 in order to do variant calling. I have obtained my vcf file but I don't have DP field in records section of the file, it is reported only in the header section. I can see the AD field, but I would like to know how many read I have after filtering.
Thank you in advance!

Best regards

Tagged:

Issue · Github
by Sheila

Issue Number
1660
State
open
Last Updated
Assignee
Array
Milestone
Array

Comments

Sign In or Register to comment.