GATK4 Plot segmented coverage
I am using GATK4 for detecting CNV in 143 genes. Everything works great except for the plots, i found no errors in the command line but i dont know why all the plots appear empty. i checked all the .tn and .ptn files and they seem fine. I am using CENTOS and installed all de R dependencies needed for this step. Can someone help me? Or does somebody had the same issue?