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Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK4 Plot segmented coverage
I am using GATK4 for detecting CNV in 143 genes. Everything works great except for the plots, i found no errors in the command line but i dont know why all the plots appear empty. i checked all the .tn and .ptn files and they seem fine. I am using CENTOS and installed all de R dependencies needed for this step. Can someone help me? Or does somebody had the same issue?