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Criteria for filtering OxoG artifacts in Mutect2
What filter criteria should one apply to filter out OxoG artifacts for M2 calls?
Elsewhere in the forum, it is mentioned that "You can use the FOXOG annotation as an estimate of whether the relative support from the two pair orientations indicates bias or not." If this the annotation is to be used for filtering, what is the threshold that to filter out calls that show a bias.
Thanks for your input!