Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Different file sizes ?
Hi GATK team,
I have two questions about file size change. I just want to make sure there is no wrong in my pipeline.
Our cluster sometimes kills several jobs without error message.
- I have recalibrated lots of bam files and their sizes have been enlarged a lot. e.g. the size of a file increased from 3.6G to 6.3G.
- then I have done the variants calling. the result gvcf files have very different size, but all of them have variants on 22 CHROMs.