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Oncotator1.9 Output

Haiying7Haiying7 Heidelberg, GermanyMember

Where can I find any documentation for Oncotator1.9?
What do the following variables mean?
i_t_ALT_F1R2
i_t_ALT_F2R1
i_t_REF_F1R2
i_t_REF_F2R1

If these are same as another software:
http://archive.broadinstitute.org/cancer/cga/dtoxog
it does not make sense to me.

The vcf file I input to oncotator is vcf format, and each row has 2 sample information in the right most side. So 2 columns for each vcf file.
But when oncotator preceed, it make each row from vcf into 2 rows. Then how come each row in oncotator output has both ref alt number of reads?

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