MuTect2 output to Oncotator1.9
I use MuTect2 output vcf file as Oncotator input.
The last 2 columns in vcf file is tumor and normal, and if I input this vcf file to Oncotator, then, oncotator gives 2 rows for each row in vcf file. The 2 rows are almost identical except some information that are different in tumor and normal sample.
How can I avoid this?