The VCF file hava not fully output by using HaplotypeCaller
I have done the SNP and Indel calling about 21 samples by HaplotypeCaller, but I found there have some lines only have part of information in the VCFfile. The informations were cut from the middle of individual ,so I can not fun the filter by this VCF. In the picture ,the line 3094 and 3099 shown this problem, and it is not very commom in this table. Please help me to sovle this problem.