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why DP value in FORMAT (sample DP, I call SNVs in one sample) is higher than DP value in INFO field?
I use haplotypecaller for SNV calling in my whole exome capture sequencing project, but I found some abnormal result in the output of haplotypecaller (version GATK 3.6).
It's abnormal to see the sample DP value is higher than DP value in INFO field, because the sample DP value is filtered coverage, but DP value in INFO field is the raw one.
chr1 887801 rs3828047 A G 1730.77 PASS ABHet=0.537;AC=1;AF=0.500;AN=2;BaseCounts=60,0,54,0;BaseQRankSum=6.959;ClippingRankSum=1.879;DB;DP=114;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=1;MQRankSum=-3.411;QD=14.30;ReadPosRankSum=0.927;SOR=0.397;VariantType=SNP;set=SNP GT:AD:DP:GQ:PL 0/1:65,56:121:99:1759,0,1910
Anyone can help me with this problem?
Thanks a lot.