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How to get output in java script

Hi,
I'm trying get output of gatk function.
I thounk during 3 days that a common solution resolve my probleme as :
ByteArrayOutput baos = new ByteArrayOutputStream ()
Printstream ps = new Printstream (baos)
System.Err.setErr (ps)
It doesn't work, so i read your tutorial. But i havent' find a solution. I write this

Public class MyGatk {
@Outpout
Public PrintSream out;
private String[] args;

public MyGatk (String args[]){
    this.args=args;

}
public void Command (){
ByteArrayOutputStream baos = new ByteArrayOutputStream ()
out = new Printstream (baos)
System.Err.setErr(out)
CommandLineGatk c = new CommandLineGatk ();
CommandLineGatk.start (c,this.args);
}
}
It doesn't work too. Have you an idea for getting output ?

Issue · Github
by Sheila

Issue Number
1489
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

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