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How do I apply depth filtering..?

GeekyVtGeekyVt IndiaMember
edited November 2016 in Ask the GATK team

I would like to apply hard filtering based on read depth at Ref allele or Alt allele supporting level. Could someone guide me to achieve the same. For example, 10 read should support variant allele,

Thanks,
Vivek

Post edited by GeekyVt on

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