Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How do I apply depth filtering..?
I would like to apply hard filtering based on read depth at Ref allele or Alt allele supporting level. Could someone guide me to achieve the same. For example, 10 read should support variant allele,
Post edited by GeekyVt on