Test-drive the GATK tools and Best Practices pipelines on Terra
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1000G Indels for BaseRecalibrator
I was searching for all the recommended sets of known sites for the hg38 reference version.
As part of the recommendations, the 1000G indels is one of the input files for BQSR, but it is not present in the bundle (FTP).
I was wondering if i am missing anything or are the hg38 files not fully supported yet?
Thank you very much,