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'a malformed header' error message with known indel vcf
One of the Indel reference vcf files, which I'm trying to use for '-known' argument during RealignerTargetCreator step, gives me an error and I'm not sure how to solve this problem. (I've searched a bunch of references and not been successful...)
Here is the Indel reference vcf file giving me an error:
Here is the error message I'm getting now:
ERROR MESSAGE: Your input file has a malformed header: Unexpected tag POS in line <ID=POS=POS-1,Number=0,Type=Flag,Description="POS has been adjusted due to missing REF in NCBI VCF file">
Any comment is welcomed.
Thank you for your time!