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DP in the VCF is different from the number of reads in the bam file after indel realign
I have called SNPs and want to use the reads number. However, I found in the VCF file the DP is A(which will be shown in the attached file). However, in the bam file which is used for SNP calling using UnifiedGenotyper, the reads aligned to the specific location is for more larger than A. Can you explain this?