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I used the below command
"java -Xmx2g -jar GenomeAnalysisTK.jar -T RealignerTargetCreator -R ref.fa -I lib_sorted.bam -o lib.intervals -nt INT"
to run my data, but the program stoped when running "INFO 11:29:09,811 GenomeAnalysisEngine - Strictness is SILENT".
Can anyone tell me how to solve the problem? Thanks.