To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at

MuTect2 Best Practice

Zhenyu_ZhangZhenyu_Zhang University of ChicagoMember

I saw the new MuTect2 best practice here, with removing of indelrealignment. Does it apply to GATK 3.5/3.6 or the proposed GATK 4?

Best Answer


Sign In or Register to comment.