If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Loss of Heterozygosity and the MNP variants
I searched around the forum but could not confirm --- whether the MNP annotation used by "SelectVariants" tool actually covers loss of heterozygosity (LOH) on a relative large genome region. (LOH occurs when information in part of one chromosome is replaced by the same region of the other chromosome.) Thanks a lot.