We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Loss of Heterozygosity and the MNP variants

mscjuliamscjulia United StatesMember


I searched around the forum but could not confirm --- whether the MNP annotation used by "SelectVariants" tool actually covers loss of heterozygosity (LOH) on a relative large genome region. (LOH occurs when information in part of one chromosome is replaced by the same region of the other chromosome.) Thanks a lot.


  • SheilaSheila Broad InstituteMember, Broadie ✭✭✭✭✭


    Sorry for the late response. I am not sure I understand your question. I think SelectVariants will only output the MNP sites, but not give any other information related to it.


Sign In or Register to comment.