trustAnchors mustn't be empty ...

Will_GilksWill_Gilks University of Sussex, UKMember ✭✭

I'm starting to get a weird warning message which appears four times at the end of any GATK command run as a qsub job on a Linux SGE.

INFO 15:57:27,936 HttpMethodDirector - I/O exception ( caught when processing request: java.lang.RuntimeException: Unexpected error: the trustAnchors parameter must be non-empty

Sysadmin here thinks it could've been broken by a java update. I'm using GATK 3.4 so I know, I know, I should get it updated.


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