trustAnchors mustn't be empty ...
I'm starting to get a weird warning message which appears four times at the end of any GATK command run as a qsub job on a Linux SGE.
INFO 15:57:27,936 HttpMethodDirector - I/O exception (javax.net.ssl.SSLException) caught when processing request: java.lang.RuntimeException: Unexpected error: java.security.InvalidAlgorithmParameterException: the trustAnchors parameter must be non-empty
Sysadmin here thinks it could've been broken by a java update. I'm using GATK 3.4 so I know, I know, I should get it updated.