Bug report: DepthOfCoverage csv output

lindenblindenb FranceMember ✭✭

Hi GATK team.

FYI:

when using DepthOfCoverage 3.6.0 using the following arguments:

-T DepthOfCoverage  -R $(REF)   --validation_strictness LENIENT  -L:capture,BED in.bed  -I in.al --outputFormat csv -o  out.tsv --omitIntervalStatistics  --omitPerSampleStats --omitLocusTable 

the first line of the header looks tab delimited

Locus   Total_Depth Average_Depth_sample    Depth_for_SAMPLE

while the remaining lines are comma delimited

1:1116653,116,116.00,116

Regards,

Pierre

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Issue · Github
by Sheila

Issue Number
1281
State
closed
Last Updated
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Milestone
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Closed By
chandrans

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