Mutect version of Picard tool for filtering

Hello All,
I am using Mutect for variant discovery on RNA-seq data and I am following Best practices, but I didn't see a direct description about which version of Picard should used for reordering and removing duplicates

Would be great if anyone comment on this.

thank you

Answers

  • KateNKateN Cambridge, MAMember, Broadie, Moderator

    Hello! Your question seems to be more related to GATK (or in this case, Picard) than WDL. I am moving you over to our GATK forum where @Sheila can help you with your question. If this is a mistake, please let me know and I can move the thread back.

  • SheilaSheila Broad InstituteMember, Broadie, Moderator

    @Alva
    Hi,

    We always recommend using the latest version of all the tools. Have a look here for what the latest version is and how to download it.

    -Sheila

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