Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect version of Picard tool for filtering
I am using Mutect for variant discovery on RNA-seq data and I am following Best practices, but I didn't see a direct description about which version of Picard should used for reordering and removing duplicates
Would be great if anyone comment on this.