Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
recalibration tables for 1000 genomes
I am certain that the GATK team & associates have computed Base Quality Score Recalibration tables for each of the BAM files in the 1000 Genomes dataset.
Are these recalibration tables available for download? How can I get a copy of them?