Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Parameter "--fraction_contamination" does not work in Mutect-1.1.7
hi, I used Mutect-1.1.7 to call low frequency variants, and I want to set "--fraction_contamination" to be 0. But it seemed that can't work. I got the message "--fraction_contamination: command not found". And the "fraction_contamination" column in output file was still 0.02 as default. Anyone knows how to use this parameter? Thank you very much!