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Picard metrics definitions

anna__montaneranna__montaner Barcelona Member

Hi!
I was taking a look at the documentation about the duplication metrics of MarkDuplicates and I have some doubts. Is the UNPAIRED_READS_EXAMINED field taking into account only primary alignments or also secondary and supplementary alignments?

Thank you!

Tagged:

Issue · Github
by Sheila

Issue Number
1112
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

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