Picard metrics definitions

anna__montaneranna__montaner Barcelona Member

Hi!
I was taking a look at the documentation about the duplication metrics of MarkDuplicates and I have some doubts. Is the UNPAIRED_READS_EXAMINED field taking into account only primary alignments or also secondary and supplementary alignments?

Thank you!

Tagged:

Issue · Github
by Sheila

Issue Number
1112
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

Best Answers

Answers

Sign In or Register to comment.