Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Should I use COSMIC vcf in Base Quality Recalibration

I wonder should I use COSMIC VCF as kownSites instead of dbSNP VCF in Base Quality Recalibration when using MuTect in somatic mutation calling?

Best Answer


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