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Question about unknown in oncotator results
Dear Oncotator developers,
I am trying to use Oncotator to annotate MAF or VCF files. According to instruction in this forum, I tried to run with test data "Patient0.snp.maf.txt", then Oncotator provides only "UNKNOWN" information from Oncotator results.
Here is my command line,
oncotator -v --db-dir /path/to/oncotator_v1_ds_Jan262015 /home/suimye/tool/oncotator-184.108.40.206/test/testdata/maflite/Patient0.snp.maf.txt exampleOutput.tsv hg19
In this result, all variants were not annotated. To evaluate this result, I put this data on Oncotator web. Then, the variants are annotated successfully.
From searching by google, I found out similar oncotator results as
Is this correct output? I suspect several warning messages observed in above logs may influence this problem such as " THERE ARE NO DATASOURCES REGISTERED" and "%s does not exist, so there will be no datasources".
If you have any suggestion, please reply me.
Thanks for development of great tools!!