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Download the latest Picard release at https://github.com/broadinstitute/picard/releases.
GATK version 4.beta.3 (i.e. the third beta release) is out. See the GATK4 beta page for download and details.

How does Picardtools CollectInsertSizeMetrics calculate insert size?

biobenkjbiobenkj Grand Rapids, MIMember
edited July 2016 in Ask the GATK team

Does the tool calculate the insert size from the first base pair of read 1 through to read 2?

e.g.

Read 1
|-------------| .....................................................................
.....................................................................|--------------| Read 2

|----------------------------insert size------------------------|

Issue · Github
by Sheila

Issue Number
1073
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

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