How does Picardtools CollectInsertSizeMetrics calculate insert size?

biobenkjbiobenkj Grand Rapids, MIMember
edited July 2016 in Ask the GATK team

Does the tool calculate the insert size from the first base pair of read 1 through to read 2?

e.g.

Read 1
|-------------| .....................................................................
.....................................................................|--------------| Read 2

|----------------------------insert size------------------------|

Issue · Github
by Sheila

Issue Number
1073
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closed
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vdauwera

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