Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Are there Quality score considerations for MinION data?
I am considering using the GATK to find variants in MinION data. I understand that the quality score values for MinION data are not standard scores. What considerations do I need to account for in the GATK pipeline when looking for variants?