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Uintended multithreading

nahmednahmed TU DelftMember
edited June 2016 in Ask the GATK team

While running the base recalibrator ( and also indel realigner) I have noticed that multiple CPU threads are launched as can be seen by linux "top" command even if nt=nct=1. Is this the default behaviour or something else is happening in my case. I have seen this in both 3.5 and 3.6 GATK version

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