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locus or gene name in my snps.vcf file
Hello sorry to trouble you, but I am working with Arabidopsis and In my final file result using GATK I have this information from snps in my sample:
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PA01
1 32210 0 T C 13.22 LowQual AC=1 AF=1.00 AN=1 BaseQRankSum=-0.389 ClippingRankSum=0.000 DP=11 FS=7.404 MLEAC=1 MLEAF=1.00 MQ=60.00 MQRankSum=0.000 QD=1.20 ReadPosRankSum=-0.275 SOR=3.352 GT:AD:DP:GQ:PL 1:5 6:11:43:43 0
How I can get the information of gene description or localization from those snps? (For example AT5G28540)
Thanks in advance