Is dbSNP GRCh38.p2.vcf and GRCh38.p7.fa compatible in MuTect??
Is the BAM file generated from STAR using GRCh38.p7.fa and GRCh38.p7.gtf compatible with dbSNP_GRCh38.p2? I didn
t do it yet, but I want to make sure that the patched version doesnt matter.
And one more thing. When doing MuTect analysis using RNA_seq dose cosmic_coding region only (not included noncoding region), is it ok?
Thanks for your help