We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
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Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is dbSNP GRCh38.p2.vcf and GRCh38.p7.fa compatible in MuTect??
Is the BAM file generated from STAR using GRCh38.p7.fa and GRCh38.p7.gtf compatible with dbSNP_GRCh38.p2? I didn
t do it yet, but I want to make sure that the patched version doesnt matter.
And one more thing. When doing MuTect analysis using RNA_seq dose cosmic_coding region only (not included noncoding region), is it ok?
Thanks for your help