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Picard Invalid file

anj123anj123 Member
edited June 2016 in Ask the GATK team

Hi,

I installed the source tar ball for picard and then did tar -xvzf. then tried moved my files to the location under the sub folder sam and tried running the sortsam.jar command thus:

java -Xmx2g -jar picard-tools-2.4/SortSam.jar I="SORTED.bam" O="COORDSORTED.BAM" SO=coordinate VALIDATION_STRINGENCY=SILENT

but im getting this error:

Error: Invalid or corrupt jarfile

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