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Picard Invalid file
I installed the source tar ball for picard and then did tar -xvzf. then tried moved my files to the location under the sub folder sam and tried running the sortsam.jar command thus:
java -Xmx2g -jar picard-tools-2.4/SortSam.jar I="SORTED.bam" O="COORDSORTED.BAM" SO=coordinate VALIDATION_STRINGENCY=SILENT
but im getting this error:
Error: Invalid or corrupt jarfile