Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
XHMM support is no longer available here
The XHMM (eXome-Hidden Markov Model) C++ software suite calls copy number variation (CNV) from targeted capture sequencing data. Until now we hosted XHMM support in our forum, but as of today XHMM is now exclusively supported on the XHMM website.
For XHMM support, please go to http://atgu.mgh.harvard.edu/xhmm/questions.shtml