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Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Which dotkits should you load to run GATK CNV or ACNV? (Broad Internal)

LeeTL1220LeeTL1220 Arlington, MAMember, Broadie, Dev ✭✭✭
use .hdfview-2.9
use Java-1.8
use .r-3.1.3-gatk-only

If these don't work, move to a VM where the dotkits are not broken.

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