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a deletion with two names
Genomestrip/2.0 deletion disco & geno pipeline, generated a record with two variant IDs which is a bit confusing.
chr2L 4240777 chr2L.DEL716,chr2L.DEL717 G <DEL> . PAIRSPERSAMPLE AC=24;AF=0.054;AN=442;GSDEPTHRANKSUMPVALUE=NA;GSDMIN=1;GSOUTLEFT=0;GSOUTLIERS=0;GSOUTRIGHT=0;IMPRECISE;SVTYPE=DEL;set=FilteredInAll GT:CNF:FT:GP:GQ:PL 0/0:2.0916:PASS:-0.00,-5.59,-76.43:56:0,
I was wondering what the cause of this was, if I'd lose much information if I just deleted the second name.
Note I called chromosomes separately, then prefixed varIDs with chr name.