Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Error: Argument with name 'drf' isn't defined.
I'm currently trying to call SNP on several samples (8 bam, 1 pseudoref) and 75.15% of my reads have failed the DuplicateReadFilter. I tried to disable this filter with "-drf DuplicateRead" in the command line but that error came up (drf not defined).