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Variant Annotator and other CALLERS
talking about VariantAnnotator, could it be safely used on VCF files produced by other callers like STRELKA, VIRMID, Varscan2 etc ...beside MUTECT1 or MUTECT2 ? I am referring to the use of VariantAnnotator with the options for FS, SOR, RMSMappingQuality, QualByDepth, ReadPosRankSumTest ...
or, are there any minimal requirements for a VCF file produced by other callers in order to be fully annotated by VariantAnnotator ?