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information about GATK genotype

Paola_OrsiniPaola_Orsini University of BariMember

Hi,
I have a VCF file obtained from GATK with the HaplotypeCaller analysis type. I have some difficulties in the interpretation of the genotype of the variants called.
How should I interpret the following genotypes:1/2,1/3,2/3,3/3,0/2 and so on?
Thank you for your help.
Best regards,

Paola

Answers

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