Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
[Co-realignment] Somatic variant discovery (Cancer-specific processing)
I can't found the detail information of Co-realignment except for attached image.
Could I get the improvment information of Co-realignment or detailed information?
Can I processing the one BAM file (after Co-realingment, Normal and Tumor merged into one BAM) with Mutect2 for somatic call.