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about Variant Annotator and MUTECT2

BogdanBogdan Palo Alto, CAMember ✭✭

Dear Sheila, and Geraldine,

please could you advise: when using VariantAnnotator on a MUTECT vcf file, which ones of the following fields could I add please ;) :

Answers

  • SheilaSheila Broad InstituteMember, Broadie ✭✭✭✭✭

    @Bogdan
    Hi Bogdan,

    We cannot recommend which annotations to use. It is best to look up which ones are suitable for your experiment and use those. However, if you do find that one you need is not working, let us know and we will see if it can be added.

    -Sheila

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