Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

about Variant Annotator and MUTECT2

BogdanBogdan Palo Alto, CAMember ✭✭

Dear Sheila, and Geraldine,

please could you advise: when using VariantAnnotator on a MUTECT vcf file, which ones of the following fields could I add please ;) :


  • SheilaSheila Broad InstituteMember, Broadie, Moderator admin

    Hi Bogdan,

    We cannot recommend which annotations to use. It is best to look up which ones are suitable for your experiment and use those. However, if you do find that one you need is not working, let us know and we will see if it can be added.


Sign In or Register to comment.